PHATRDRAFT_49634 cyclic amp receptor protein (CAP_ED)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_49634 chr_23 cyclic amp receptor protein (CAP_ED) 266003 267868 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0085

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0061
 0.31

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... cl00047 81.9885 1.77E-18 280 - 388 specific 237999
CAP_ED superfamily effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... - 81.9885 1.77E-18 280 - 388 superfamily 260155
EFh superfamily EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal... - 42.9201 2.08E-05 484 - 551 superfamily 238008
EFh superfamily EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal... - 42.9201 2.08E-05 484 - 551 superfamily 238008
TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX... cl00388 39.0785 0.000433291 136 - 226 specific 239245
Thioredoxin_like superfamily Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; The thioredoxin (TRX... - 39.0785 0.000433291 136 - 226 superfamily 260398
FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell... - 55.0078 4.14E-09 469 - 621 multi-dom 227455
Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein... - 65.6231 2.63E-12 279 - 411 multi-dom 223736

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
42194 Not available 201035 250452 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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