PHATRDRAFT_50155 glycosyl hydrolase family (GH18_chitinase-like superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_50155 chr_27 glycosyl hydrolase family (GH18_chitinase-like superfamily) 213074 214651 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0369

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0110
 0.50

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ChtBD1 Hevein or type 1 chitin binding domain; Hevein or type 1 chitin binding domain (ChtBD1), a lectin... cl16916 36.2094 0.00240237 40 - 61 specific 211311
ChtBD1 superfamily Hevein or type 1 chitin binding domain; Hevein or type 1 chitin binding domain (ChtBD1), a lectin... - 36.2094 0.00240237 40 - 61 superfamily 266489
GH18_chitinase-like superfamily The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer... - 72.0252 1.35E-14 97 - 293 superfamily 263970
ChtBD2 Chitin-binding domain type 2; Chitin-binding domain type 2. cl02629 43.5865 7.38E-06 467 - 515 specific 214696
CBM_14 superfamily Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in... - 43.5865 7.38E-06 467 - 515 superfamily 261382
Glyco_hydro_18 Glycosyl hydrolases family 18; Glycosyl hydrolases family 18. - 59.8261 4.27E-10 96 - 336 multi-dom 250070

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
263782 Not available 196689 101609 214491 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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