PHATRDRAFT_51303 (RRM_SF superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_51303 chr_33 (RRM_SF superfamily) 10530 12005 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0140

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0230
 0.25

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 94.6405 3.85E-25 145 - 216 superfamily 266524
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 94.6405 3.85E-25 145 - 216 superfamily 266524
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 91.9322 2.86E-22 18 - 211 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
37126 Not available 171245 282582 217660 Cre17.g725301.t1.1 Not available 348578

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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