PHATRDRAFT_52198 (RPN6)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_52198	chr_13	(RPN6)	123724	124978	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0183

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0125	0.29	3.9 3700

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PCI		PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).	cl02111	87.672	2.85E-21	265 - 368	specific	250589
PCI superfamily		PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).	-	87.672	2.85E-21	265 - 368	superfamily	261183
RPN6		26S proteasome regulatory complex component [Posttranslational modification, protein turnover,...	-	348.831	2.29E-116	11 - 400	multi-dom	227488

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
28028		Not available	267924	263105	415549	Cre02.g097650.t1.2	AT1G29150.1	348875

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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