PHATRDRAFT_54677 dpod1_orysj dna polymerase delta catalytic subunit (PTZ00166)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_54677 chr_12 dpod1_orysj dna polymerase delta catalytic subunit (PTZ00166) 102387 105950 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0096

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0101
 0.21

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
POLBc_delta DNA polymerase type-B delta subfamily catalytic domain. Three DNA-dependent DNA polymerases type B... cl10023 740.235 0 557 - 958 specific 99916
POLBc superfamily DNA polymerase type-B family catalytic domain. DNA-directed DNA polymerases elongate DNA by adding... - 740.235 0 557 - 958 superfamily 245235
DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA... cl10012 410.429 4.30E-135 268 - 506 specific 99820
DnaQ_like_exo superfamily DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; The DnaQ-like... - 410.429 4.30E-135 268 - 506 superfamily 263941
zf-C4pol superfamily C4-type zinc-finger of DNA polymerase delta; In fission yeast this zinc-finger domain appears is... - 83.2512 6.07E-19 996 - 1069 superfamily 258446
zf-C4pol superfamily C4-type zinc-finger of DNA polymerase delta; In fission yeast this zinc-finger domain appears is... - 83.2512 6.07E-19 996 - 1069 superfamily 258446
PTZ00166 DNA polymerase delta catalytic subunit; Provisional - 1393.6 0 51 - 1085 multi-dom 240301

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
35189 Not available 201939 188144 455696 Cre01.g015250.t1.1 AT5G63960.1 532354

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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