10731 DENR_C
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10731 chr_17 DENR_C 546190 546981 + DENR_C

Synonyms

NCBI ID Ensembl Genomes exon ID
7453084 Thaps10731.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0206

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0256
 0.42

Most Highly Correlated Transcripts

bd624

(bd624) Glyco_transf_34 superfamily
0.9466

bd718

(bd718) PRK10387
0.9181

bd218

(bd218) Chloroa_b-bind superfamily
0.9108

bd1863

(bd1863) NA
0.9087

bd1820

(bd1820) Fasciclin
0.8898

25040

NA
0.8889

261817

LPLAT_AGPAT-like
0.8855

268257

fabG
0.8851

40148

(UBC2) UBCc
0.8825

261400

NA
0.8805

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DENR_C C-terminal domain of DENR and related proteins; DENR (density regulated protein), together with MCT... cl00229 103.406 7.98E-28 174 - 252 specific 211320
eIF1_SUI1_like superfamily Eukaryotic initiation factor 1 and related proteins; Members of the eIF1/SUI1 (eukaryotic... - 103.406 7.98E-28 174 - 252 superfamily 260281

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_31987 PHATRDRAFT_31987 269067 312354 Not available Not available Not available 259204

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003743 GO:0006413 -

GO:0003743

translation initiation factor activity

Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO Category: 
MF

GO:0006413

translational initiation

Details: 
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
GO Category: 
BP

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