13393 PLN02321
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
13393 chr_1 PLN02321 2057493 2059557 + PLN02321

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps13393.2, Thaps13393.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0052

Most Highly Correlated Transcripts

20928

hypothetical protein
1

4612

hypothetical protein
0.9355

25468

Methyltransf_22
0.9316

3180

hypothetical protein
0.9226

2856

TetR_N superfamily
0.9222

24146

hypothetical protein
0.9202

24503

hypothetical protein
0.9182

40995

phr2
0.9181

261126

DadA
0.9174

16193

S49_Sppa_N_C
0.9164

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain; 2-isopropylmalate... cl18962 480.407 1.31E-166 88 - 373 specific 163678
DRE_TIM_metallolyase superfamily DRE-TIM metallolyase superfamily; The DRE-TIM metallolyase superfamily includes 2-isopropylmalate... - 480.407 1.31E-166 88 - 373 superfamily 267315
LeuA_dimer LeuA allosteric (dimerisation) domain; This is the C-terminal regulatory (R) domain of alpha-... cl07212 118.356 4.08E-31 475 - 622 specific 214910
LeuA_dimer superfamily LeuA allosteric (dimerization) domain; This is the C-terminal regulatory (R) domain of alpha-... - 118.356 4.08E-31 475 - 622 superfamily 263229
PLN02321 2-isopropylmalate synthase - 1055.34 0 1 - 645 multi-dom 215182

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44618 PHATRDRAFT_44618 277320 236620 427029 Cre06.g258733.t2.1 AT1G74040.1 552331

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0019752 GO:0046912 GO:0003852 GO:0009098 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0019752

carboxylic acid metabolic process

Details: 
The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
GO Category: 
BP

GO:0046912

transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer

Details: 
Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor), with the acyl group being converted into alkyl on transfer.
GO Category: 
MF

GO:0003852

2-isopropylmalate synthase activity

Details: 
Catalysis of the reaction: 3-methyl-2-oxobutanoate + acetyl-CoA + H(2)O = (2S)-2-isopropylmalate + CoA + H(+).
GO Category: 
MF

GO:0009098

leucine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of leucine, 2-amino-4-methylpentanoic acid.
GO Category: 
BP

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