168 (RPB1) PRK08566
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
168 chr_1 (RPB1) PRK08566 692424 697888 + PRK08566
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0232
Syja_N
0.936
(MAPKKK) S_TKc
0.9341
(HSF43) HSF_DNA-bind superfamily
0.9332
hypothetical protein
0.9313
hypothetical protein
0.9308
(Tp_Myb2R7) MYB DNA binding protein/ transcription factor-like protein
0.9307
SNF2_N
0.928
MYSc
0.9254
NhaP
0.9251
Peptidase_M36
0.9244
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNAP_II_RPB1_N Largest subunit (Rpb1) of eukaryotic RNA polymerase II (RNAP II), N-terminal domain; The two... cl19114 1357.21 0 35 - 861 specific 259848
RNAP_largest_subunit_N superfamily Largest subunit of RNA polymerase (RNAP), N-terminal domain; This region represents the N-terminal... - 1357.21 0 35 - 861 superfamily 267467
RNAP_II_Rpb1_C Largest subunit (Rpb1) of Eukaryotic RNA polymerase II (RNAP II), C-terminal domain; RNA polymerase... cl11429 663.519 0 1054 - 1480 specific 132720
RNAP_largest_subunit_C superfamily Largest subunit of RNA polymerase (RNAP), C-terminal domain; RNA polymerase (RNAP) is a large multi... - 663.519 0 1054 - 1480 superfamily 142634
RNA_pol_Rpb1_6 superfamily RNA polymerase Rpb1, domain 6; RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 229.681 3.30E-68 881 - 1075 superfamily 252929
RNA_pol_Rpb1_6 superfamily RNA polymerase Rpb1, domain 6; RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 229.681 3.30E-68 881 - 1075 superfamily 252929
PRK08566 DNA-directed RNA polymerase subunit A'; Validated - 924.257 0 33 - 882 multi-dom 236292
RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5; RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 407.834 1.13E-127 815 - 1432 multi-dom 147266
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42100 PHATRDRAFT_42100 242566 262607 Not available Not available Not available Not available
KEGG description KEGG Pathway
RNA polymerase map03020
GO:0003677 GO:0005665 GO:0006366 GO:0003899 GO:0005634 GO:0006350 GO:0003900 GO:0003901 GO:0003902 -

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

DNA-directed RNA polymerase II, core complex

Details: 
RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
GO Category: 
CC

transcription from RNA polymerase II promoter

Details: 
The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
GO Category: 
BP

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

NA

Details: 
NA
GO Category: 
NA

NA

Details: 
NA
GO Category: 
NA

NA

Details: 
NA
GO Category: 
NA

NA

Details: 
NA
GO Category: 
NA
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