20675 WD40 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
20675	chr_1	WD40 superfamily	712345	716286	+	WD40 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7453444	Thaps20675.9, Thaps20675.10, Thaps20675.2, Thaps20675.7, Thaps20675.4, Thaps20675.3, Thaps20675.5, Thaps20675.8, Thaps20675.1, Thaps20675.6

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0414

Most Highly Correlated Transcripts

262352 MIF4G 0.9289	24604 hypothetical protein 0.9214	23346 hypothetical protein 0.9175	25603 hypothetical protein 0.9165	21997 TPR_12 0.9122	12836 EEP superfamily 0.9121
5869 hypothetical protein 0.9116	23582 hypothetical protein 0.9101	1216 hypothetical protein 0.9088	24665 hypothetical protein 0.9088

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	63.1228	6.31E-11	277 - 449	superfamily	238121

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_46891	PHATR_46891	207884	251619	251007	Not available	Not available	312032

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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