21282 Pyrid_oxidase_2 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21282	chr_2	Pyrid_oxidase_2 superfamily	1018175	1023744	+	Pyrid_oxidase_2 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450348	Thaps21282.9, Thaps21282.7, Thaps21282.6, Thaps21282.8, Thaps21282.2, Thaps21282.5, Thaps21282.4, Thaps21282.1, Thaps21282.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0006

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0244	0.36	0.00000032 0.014

Most Highly Correlated Transcripts

261400 NA 0.8798	23516 hypothetical protein 0.8798	bd1893 (bd1893) NA 0.8782	24754 hypothetical protein 0.8721	269232 EFh 0.8715	262510 Alg6_Alg8 superfamily 0.8714
1383 (PDS1) phytoene_desat 0.8713	6456 MhpC 0.865	bd463 (bd463) Aa_trans superfamily 0.8575	264556 FBPase 0.8568

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Pyrid_oxidase_2 superfamily		Pyridoxamine 5'-phosphate oxidase; Pyridoxamine 5'-phosphate oxidase.	-	111.161	2.20E-27	1248 - 1389	superfamily	258150
DUF2470 superfamily		Protein of unknown function (DUF2470); This family is a putative haem-iron utilisation family, as...	-	64.1762	4.26E-12	1391 - 1481	superfamily	256092
HugZ		Putative heme iron utilization protein [Inorganic ion transport and metabolism]	-	82.4368	4.27E-17	1256 - 1489	multi-dom	223819

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_4413	PHATRDRAFT_4413	269010	296908	453407	Cre02.g098250.t1.2	AT3G03890.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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