22432 UBCcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22432	chr_4	UBCc	1957281	1958154	-	UBCc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451971	Thaps22432.1, Thaps22432.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0066

Most Highly Correlated Transcripts

23960 hypothetical protein 0.9124	30701 PRK05279 0.9065	bd1221 (bd1221) recQ_fam 0.9025	31113 Cyt_c_Oxidase_VIb 0.8972	bd687 (bd687) NA 0.8953	42867 Cytochrom_C1 0.8935
40293 TRX_family 0.8898	264096 COX17 0.8896	36107 PqqL 0.8867	36641 Aldolase_Class_I superfamily 0.8865

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UBCc		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	cl00154	213.988	1.15E-71	4 - 142	specific	238117
UBCc superfamily		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	-	213.988	1.15E-71	4 - 142	superfamily	260221

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_22525	PHATRDRAFT_22525	210723	248693	444197	Cre16.g693700.t1.2	AT3G08690.2	354820

KEGG

KEGG description	KEGG Pathway
Protein processing in endoplasmic reticulum	map04141

GO Terms

GO:0004840 GO:0006464 GO:0006512 GO:0004842 -

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