23500 crypto_DASH
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
23500 chr_7 crypto_DASH 1146582 1148331 + crypto_DASH
NCBI ID Ensembl Genomes exon ID
7447079 Thaps23500.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0319
AAA
0.9286
RING
0.8898
hypothetical protein
0.8889
hypothetical protein
0.8842
hypothetical protein
0.8826
hypothetical protein
0.8816
MPN superfamily
0.8815
(CTS1) PTZ00399
0.881
(bd393) nst superfamily
0.8793
SART-1
0.8785
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
FAD_binding_7 superfamily FAD binding domain of DNA photolyase; FAD binding domain of DNA photolyase. - 169.352 5.27E-48 298 - 539 superfamily 251955
FAD_binding_7 superfamily FAD binding domain of DNA photolyase; FAD binding domain of DNA photolyase. - 169.352 5.27E-48 298 - 539 superfamily 251955
DNA_photolyase superfamily DNA photolyase; This domain binds a light harvesting cofactor. - 89.9565 7.83E-21 6 - 180 superfamily 250195
DNA_photolyase superfamily DNA photolyase; This domain binds a light harvesting cofactor. - 89.9565 7.83E-21 6 - 180 superfamily 250195
crypto_DASH cryptochrome, DASH family; Photolyases and cryptochromes are related flavoproteins. Photolyases... - 261.924 1.02E-80 6 - 526 multi-dom 234002
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_55091 PHATRDRAFT_55091 183137 285541 247241 Not available Not available Not available
KEGG description KEGG Pathway
Not available Not available
GO:0003913 GO:0006281 GO:0003904 -

DNA photolyase activity

Details: 
Catalysis of the repair of a photoproduct resulting from ultraviolet irradiation of two adjacent pyrimidine residues in DNA.
GO Category: 
MF

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

deoxyribodipyrimidine photo-lyase activity

Details: 
Catalysis of the reaction: cyclobutadipyrimidine (in DNA) = 2 pyrimidine residues (in DNA). This reaction represents the reactivation of irradiated DNA by light.
GO Category: 
MF
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