23698 DUF4336 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23698	chr_8	DUF4336 superfamily	264109	265530	-	DUF4336 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443473	Thaps23698.2, Thaps23698.3, Thaps23698.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0013

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0130	0.40	0.00008 4.1

Most Highly Correlated Transcripts

17707 NADB_Rossmann superfamily 0.9331	8872 hypothetical protein 0.9294	7641 metallo-dependent_hydrolases superfamily 0.9268	8784 hypothetical protein 0.9235	1219 PAP_fibrillin superfamily 0.9165	4876 hypothetical protein 0.9099
18469 FkpA 0.9028	31751 PKCI_related 0.9018	26991 GRX_GRXh_1_2_like 0.8992	4331 Aldolase_Class_I superfamily 0.8967

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF4336 superfamily		Domain of unknown function (DUF4336); Domain of unknown function (DUF4336).	-	67.2481	1.01E-12	122 - 278	superfamily	206402

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_44673	PHATRDRAFT_44673	214749	184520	442540	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments