25094 PseudoU_synth_RluCD_like
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
25094 chr_16a PseudoU_synth_RluCD_like 18450 19905 - PseudoU_synth_RluCD_like
NCBI ID Ensembl Genomes exon ID
7445457 Thaps25094.2, Thaps25094.3, Thaps25094.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0122
hypothetical protein
0.9112
PLN02350
0.9087
Prolidase
0.8892
Sec1
0.8851
MFS
0.8846
AAK superfamily
0.8787
cysE
0.8744
(KAR3) NADB_Rossmann superfamily
0.874
(bd410) HNHc
0.8731
GRX_PICOT_like
0.873
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_RluCD_like Pseudouridine synthase, RsuA/RluD family; This group is comprised of eukaryotic, bacterial and... cl00130 104.727 1.73E-26 94 - 354 specific 211346
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 104.727 1.73E-26 94 - 354 superfamily 260207
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12940 PHATRDRAFT_12940 Not available 63548 Not available Not available Not available Not available
KEGG description KEGG Pathway
Not available Not available
GO:0003723 GO:0006396 GO:0009982 GO:0004730 -

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF
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