25142 SWIRM
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25142 chr_16a SWIRM 322882 326348 + SWIRM

Synonyms

NCBI ID Ensembl Genomes exon ID
7442529 Thaps25142.1, Thaps25142.2, Thaps25142.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0242

Most Highly Correlated Transcripts

261324

PLN02724
0.9196

264548

FusA
0.9167

2897

NGN_Euk
0.9158

25270

hypothetical protein
0.9098

263785

(Tp_TAZ4_PHD2_ZZ2) KAT11 superfamily
0.909

268118

WD40
0.9077

6012

hypothetical protein
0.9074

22620

(Tp_AP2-EREBP1) regulator [Rayko]
0.9063

21839

Symplekin_C
0.9059

15114

Zinc_peptidase_like superfamily
0.9055

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SWIRM superfamily SWIRM domain; This SWIRM domain is a small alpha-helical domain of about 85 amino acid residues... - 76.8967 1.19E-16 766 - 846 superfamily 252594
SWIRM superfamily SWIRM domain; This SWIRM domain is a small alpha-helical domain of about 85 amino acid residues... - 76.8967 1.19E-16 766 - 846 superfamily 252594

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54092 PHATRDRAFT_54092 145049 259214 204636 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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