261180 LRR_RI superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
261180	chr_2	LRR_RI superfamily	60795	61882	+	LRR_RI superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445075	Thaps261180.1, Thaps261180.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0245

Most Highly Correlated Transcripts

2587 O-FucT_like 0.9112	23130 NT_PAP_TUTase 0.9054	261056 (APB3) Adaptin_N 0.8972	5694 hypothetical protein 0.8969	32522 rad3 0.894	261058 UDP-g_GGTase superfamily 0.8925
32217 MA3 0.8909	262617 (Tp_Myb2R7) MYB DNA binding protein/ transcription factor-like protein 0.8886	37621 Ptr 0.8877	11371 hypothetical protein 0.8852

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LRR_RI superfamily		Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue...	-	98.5817	5.21E-24	1 - 261	superfamily	238064

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_47188	PHATRDRAFT_47188	200326	196088	63835	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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