261261 ArfGapThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
261261	chr_2	ArfGap	484821	485728	-	ArfGap

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442252	Thaps261261.1, Thaps261261.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0454

Most Highly Correlated Transcripts

4027 hypothetical protein 0.9253	23952 hypothetical protein 0.9167	21274 hypothetical protein 0.9093	37810 GMPK 0.9079	263979 PKc_like superfamily 0.9043	22666 hypothetical protein 0.8991
596 Adaptin_N 0.8974	12500 SNF2_N 0.8968	269100 S_TKc 0.8965	263963 Adaptin_N 0.8962

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ArfGap		Putative GTPase activating protein for Arf; Putative zinc fingers with GTPase activating proteins (...	cl02464	149.309	2.94E-45	85 - 212	specific	250600
ArfGap superfamily		Putative GTPase activating protein for Arf; Putative zinc fingers with GTPase activating proteins (...	-	149.309	2.94E-45	85 - 212	superfamily	261296

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_21791	PHATRDRAFT_21791	178590	197646	426599	Not available	AT3G07940.1	288477

KEGG

KEGG description	KEGG Pathway
Endocytosis	map04144

GO Terms

GO:0043087 -

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