262381 LSm6
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
262381 chr_5 LSm6 153623 154115 + LSm6
NCBI ID Ensembl Genomes exon ID
7447254 Thaps262381.2, Thaps262381.3, Thaps262381.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0055
hypothetical protein
0.9435
(bd1447) rps6
0.8062
(RL21) PLN00190
0.7403
hypothetical protein
0.7066
(RL36) Ribosomal_L36e
0.7053
PTZ00255
0.697
hypothetical protein
0.6931
(bd1472) rpmG
0.6909
hypothetical protein
0.6884
(RS30) Ribosomal_S30
0.6791
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LSm6 Like-Sm protein 6; The eukaryotic LSm proteins (LSm2-8 or LSm1-7) assemble into a hetero-heptameric... cl00259 133.031 5.36E-42 4 - 71 specific 212473
Sm_like superfamily Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form... - 133.031 5.36E-42 4 - 71 superfamily 260307
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_8518 PHATRDRAFT_8518 248412 322344 75405 Cre03.g151750.t1.2 AT3G59810.1 499052
KEGG description KEGG Pathway
Spliceosome map03040
GO:0005634 GO:0005732 GO:0006397 GO:0030529 -

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

small nucleolar ribonucleoprotein complex

Details: 
A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
GO Category: 
CC

mRNA processing

Details: 
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO Category: 
BP

ribonucleoprotein complex

Details: 
A macromolecular complex containing both protein and RNA molecules.
GO Category: 
CC
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