262414 (Tp_CSF5) CSP_CDS
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262414 chr_5 (Tp_CSF5) CSP_CDS 346995 347209 + CSP_CDS

Synonyms

NCBI ID Ensembl Genomes exon ID
7451732 Thaps262414.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0287

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0132
 0.41

Most Highly Correlated Transcripts

105

PTZ00248
0.89

39941

PRK13357
0.8739

268062

PRK14293
0.8658

268296

(RM12) Ribosomal_L7_L12
0.8645

20570

HABP4_PAI-RBP1
0.8622

1109

hypothetical protein
0.861

28570

(L7Ae) Ribosomal_L7Ae superfamily
0.8608

38964

Chorismate_synthase
0.8558

21723

DnaJ
0.8546

22240

eRF1
0.8521

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes,... cl09927 73.767 4.82E-19 1 - 59 specific 239905
S1_like superfamily S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated... - 73.767 4.82E-19 1 - 59 superfamily 263921

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15211 PHATRDRAFT_15211 Not available Not available Not available Not available AT2G21060.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0006355 GO:0003676 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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