263482 rad2
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
263482 chr_9 rad2 133450 137120 + rad2
NCBI ID Ensembl Genomes exon ID
7449266 Thaps263482.2, Thaps263482.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0261
Normalized Mean Residue
Thaps_bicluster_0009
0.42
DUF3608 superfamily
0.9419
PROCN
0.9335
hypothetical protein
0.9293
MYSc
0.9246
LRR_RI superfamily
0.9243
hypothetical protein
0.9235
FYVE
0.9224
hypothetical protein
0.9221
CAP_ED
0.9217
Glyco_18
0.9213
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
H3TH_XPG H3TH domain of Xeroderma pigmentosum complementation group G (XPG) nuclease, a structure-specific,... cl14815 128.522 2.19E-34 991 - 1092 specific 188624
H3TH_StructSpec-5'-nucleases superfamily H3TH domains of structure-specific 5' nucleases (or flap endonuclease-1-like) involved in... - 128.522 2.19E-34 991 - 1092 superfamily 265460
PIN_SF superfamily PIN (PilT N terminus) domain: Superfamily; PIN_SF The PIN (PilT N terminus) domain belongs to a... - 127.344 2.80E-32 1 - 139 superfamily 265458
PIN_SF superfamily PIN (PilT N terminus) domain: Superfamily; PIN_SF The PIN (PilT N terminus) domain belongs to a... - 127.344 2.80E-32 1 - 139 superfamily 265458
rad2 DNA excision repair protein (rad2); All proteins in this family for which functions are known are... - 292.188 1.04E-82 1 - 1163 multi-dom 233044
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_38848 PHATRDRAFT_38848 184568 223941 202521 Cre10.g429050.t1.1 AT3G28030.1 455731
KEGG description KEGG Pathway
Nucleotide excision repair map03420
GO:0003677 GO:0004518 GO:0006281 GO:0003923 GO:0016787 GO:0051336 -

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

nuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids.
GO Category: 
MF

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

GPI-anchor transamidase activity

Details: 
Catalysis of the formation of the linkage between a protein and a glycosylphosphatidylinositol anchor. The reaction probably occurs by subjecting a peptide bond to nucleophilic attack by the amino group of ethanolamine-GPI, transferring the protein from a signal peptide to the GPI anchor.
GO Category: 
MF

hydrolase activity

Details: 
Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO Category: 
MF

regulation of hydrolase activity

Details: 
Any process that modulates the frequency, rate or extent of hydrolase activity, the catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO Category: 
BP
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