264206 (RPT1) RPT1
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
264206 chr_14 (RPT1) RPT1 757729 759283 - RPT1
NCBI ID Ensembl Genomes exon ID
7441808 Thaps264206.1, Thaps264206.3, Thaps264206.2
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0389
Cyt_b561_CYB561D2_like
0.846
PI-PLCc_GDPD_SF superfamily
0.8383
hypothetical protein
0.8361
P4Hc
0.835
hypothetical protein
0.828
MFS_1
0.8237
WLM superfamily
0.8235
(APB1) Adaptin_N
0.8231
hypothetical protein
0.8227
(ARF1) Ras_like_GTPase superfamily
0.8218
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 106.461 2.00E-27 197 - 365 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 106.461 2.00E-27 197 - 365 superfamily 267297
RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover,... - 566.894 0 33 - 450 multi-dom 224143
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_28219 PHATR_28219 278878 216402 453760 Cre14.g625400.t1.1 AT1G53780.3 285612
KEGG description KEGG Pathway
Proteasome map03050
GO:0000166 GO:0017111 GO:0005524 GO:0005634 GO:0005737 GO:0016787 GO:0030163 GO:0004298 GO:0004299 -

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

hydrolase activity

Details: 
Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO Category: 
MF

protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
GO Category: 
BP

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

NA

Details: 
NA
GO Category: 
NA
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