268553 POLBc_epsilon
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
268553 chr_3 POLBc_epsilon 2023428 2032265 - POLBc_epsilon
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0085
Normalized Mean Residue
Thaps_bicluster_0176
0.34
(bd624) Glyco_transf_34 superfamily
0.9418
(bd718) PRK10387
0.9277
(bd1820) Fasciclin
0.926
(bd1387) psbE
0.9253
(bd218) Chloroa_b-bind superfamily
0.924
hypothetical protein
0.9181
(bd1765) NA
0.9144
(bd1078) NA
0.9115
HepA
0.908
(bd1893) NA
0.908
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
POLBc_epsilon DNA polymerase type-B epsilon subfamily catalytic domain. Three DNA-dependent DNA polymerases type... cl10023 1080.78 0 439 - 1054 specific 99918
POLBc superfamily DNA polymerase type-B family catalytic domain. DNA-directed DNA polymerases elongate DNA by adding... - 1080.78 0 439 - 1054 superfamily 245235
DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B... cl10012 386.615 8.85E-123 165 - 379 specific 99822
DnaQ_like_exo superfamily DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; The DnaQ-like... - 386.615 8.85E-123 165 - 379 superfamily 263941
DUF1744 superfamily Domain of unknown function (DUF1744); This domain is found on the epsilon catalytic subunit of DNA... - 262.247 1.57E-76 1437 - 1819 superfamily 254829
POLBc DNA polymerase type-B family; DNA polymerase alpha, delta, epsilon and zeta chain (eukaryota), DNA... - 200.064 2.35E-54 164 - 771 multi-dom 214691
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_52678 PHATRDRAFT_52678 165693 298741 106805 Cre03.g179961.t1.1 AT2G27120.1 310598
KEGG description KEGG Pathway
Nucleotide excision repair map03420
GO:0003887 GO:0006260 GO:0008408 GO:0000166 GO:0003677 GO:0003889 GO:0003890 GO:0003891 GO:0003893 GO:0003894 GO:0003895 GO:0015999 GO:0016000 GO:0016448 GO:0016449 GO:0016450 GO:0016451 GO:0016452 GO:0019984 -

DNA-directed DNA polymerase activity

Details: 
Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer.
GO Category: 
MF

DNA replication

Details: 
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO Category: 
BP

3'-5' exonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.
GO Category: 
MF

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

NA

Details: 
NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

Details: 
NA
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NA

NA

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NA
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NA

NA

Details: 
NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

Details: 
NA
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NA

NA

Details: 
NA
GO Category: 
NA
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