269210 RsuA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269210 chr_7 RsuA 385335 386870 - RsuA

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0329

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0211
 0.43

Most Highly Correlated Transcripts

bd1667

(bd1667) Mpp10
0.9184

bd1877

(bd1877) NA
0.8869

bd738

(bd738) NA
0.8778

bd1709

(bd1709) NA
0.875

bd1875

(bd1875) NA
0.8741

bd1801

(bd1801) NA
0.871

32774

Cis_IPPS
0.855

262862

rimM
0.8486

bd1946

(bd1946) NA
0.8483

bd930

(bd930) HA
0.8478

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 154.389 3.96E-45 145 - 315 superfamily 260207
RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation,... - 180.901 2.87E-54 77 - 309 multi-dom 224108

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_20893 PHATRDRAFT_20893 231643 167574 Not available Cre02.g095121.t1.1 AT2G39140.1 468526

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004730 GO:0003723 GO:0006396 GO:0009982 -

GO:0004730

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

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