31564 LSm5
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
31564 chr_1 LSm5 2237869 2238153 + LSm5
NCBI ID Ensembl Genomes exon ID
7449023 Thaps31564.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0181
IGPD superfamily
0.9087
CAF1
0.9053
RabGAP-TBC
0.9036
Lactamase_B superfamily
0.8986
0.8979
LSm3
0.8966
nascent-polypeptide-associated complex alpha polypeptide-like protein
0.8959
DUF2012 superfamily
0.8942
(RT5) rpsE_bact
0.893
(UBC2) UBCc
0.8903
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LSm5 Like-Sm protein 5; The eukaryotic LSm proteins (LSm2-8 or LSm1-7) assemble into a hetero-heptameric... cl00259 113.108 8.06E-34 5 - 83 specific 212479
Sm_like superfamily Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form... - 113.108 8.06E-34 5 - 83 superfamily 260307
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_10583 PHATR_10583 228873 302366 75990 Not available AT5G48870.1 Not available
KEGG description KEGG Pathway
Spliceosome map03040
GO:0005634 GO:0005732 GO:0006397 GO:0030529 -

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

small nucleolar ribonucleoprotein complex

Details: 
A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
GO Category: 
CC

mRNA processing

Details: 
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO Category: 
BP

ribonucleoprotein complex

Details: 
A macromolecular complex containing both protein and RNA molecules.
GO Category: 
CC
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