33603 zf-CHY
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33603 chr_4 zf-CHY 537930 539448 - zf-CHY

Synonyms

NCBI ID Ensembl Genomes exon ID
7452601 Thaps33603.1, Thaps33603.2, Thaps33603.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0038

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0016
 0.55

Most Highly Correlated Transcripts

261278

GRX_GRXh_1_2_like
0.8827

261400

NA
0.8532

16295

FBPase
0.8241

37497

cysE
0.8173

33407

(Tp_aureochrome4) PAS_9
0.8165

263788

amino acid/polyamine transporter
0.8077

36995

LplA
0.8044

30701

PRK05279
0.8026

264556

FBPase
0.8022

24525

hypothetical protein
0.7966

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
zf-CHY CHY zinc finger; This family of domains are likely to bind to zinc ions. They contain many... cl19861 64.2631 5.36E-13 190 - 266 specific 253220
zf-CHY superfamily CHY zinc finger; This family of domains are likely to bind to zinc ions. They contain many... - 64.2631 5.36E-13 190 - 266 superfamily 268214
zinc_ribbon_6 superfamily Zinc-ribbon; This is a typical zinc-ribbon finger, with each pair of zinc-ligands coming from more-... - 59.8592 1.44E-11 370 - 429 superfamily 258737

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12877 PHATRDRAFT_12877 198429 182844 Not available Cre17.g718300.t1.1 AT3G62970.1 Not available

KEGG

KEGG description KEGG Pathway
Ubiquitin mediated proteolysis map04120

GO Terms

GO:0000151 GO:0004842 GO:0008270 GO:0016567 -

GO:0000151

ubiquitin ligase complex

Details: 
A protein complex that includes a ubiquitin-protein ligase and other proteins that may confer substrate specificity on the complex.
GO Category: 
CC

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0016567

protein ubiquitination

Details: 
The process in which one or more ubiquitin groups are added to a protein.
GO Category: 
BP

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