33851 IBRThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
33851	chr_4	IBR	334836	336275	-	IBR

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442073	Thaps33851.2, Thaps33851.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0409

Most Highly Correlated Transcripts

37609 PKc_like superfamily 0.9006	31822 WD40 0.8965	21334 hypothetical protein 0.8918	5875 hypothetical protein 0.8787	263203 Amidase superfamily 0.8785	262088 CHD 0.877
267979 HCO3_cotransp superfamily 0.8767	38469 WD40 0.876	11085 hypothetical protein 0.8758	268084 SKIP_SNW 0.8753

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
IBR		In Between Ring fingers; the domains occurs between pairs og RING fingers	cl19760	60.8916	6.14E-12	148 - 216	specific	214763
IBR superfamily		IBR domain; The IBR (In Between Ring fingers) domain is often found to occur between pairs of ring...	-	60.8916	6.14E-12	148 - 216	superfamily	268113

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_1905	PHATRDRAFT_1905	154311	328377	430487	Cre16.g682350.t1.1	AT1G05890.1	535714

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0000151 GO:0004842 GO:0008270 GO:0016567 -

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