33946 (Tp_CCHH3) SSL1
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
33946 chr_4 (Tp_CCHH3) SSL1 1783497 1785272 + SSL1
NCBI ID Ensembl Genomes exon ID
7443748 Thaps33946.3, Thaps33946.1, Thaps33946.2
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0225
EEP superfamily
0.9314
AAA
0.9081
hypothetical protein
0.8975
Sin_N superfamily
0.8926
hypothetical protein
0.89
PTZ00416
0.887
CPSF_A
0.8863
PRP1_N
0.8847
AAA_12 superfamily
0.8833
Sec1
0.883
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
vWFA superfamily Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von... - 204.487 7.44E-63 116 - 311 superfamily 260163
C1_4 superfamily TFIIH C1-like domain; The carboxyl-terminal region of TFIIH is essential for transcription activity... - 111.566 1.40E-29 364 - 477 superfamily 263066
SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [... - 245.292 1.60E-75 50 - 477 multi-dom 227480
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54326 PHATRDRAFT_54326 138895 296149 77336 Cre03.g179550.t1.1 AT1G05055.1 345458
KEGG description KEGG Pathway
Nucleotide excision repair map03420
GO:0005634 GO:0006281 GO:0003676 GO:0008270 GO:0003700 GO:0045449 -

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

NA

Details: 
NA
GO Category: 
NA
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