34595 (PYR) PLN02527
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34595 chr_6 (PYR) PLN02527 859116 860306 - PLN02527

Synonyms

NCBI ID Ensembl Genomes exon ID
7443619 Thaps34595.2, Thaps34595.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0367

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9557

16295

FBPase
0.9281

13448

Sec1
0.9081

264556

FBPase
0.8959

7564

DUF547
0.8941

31598

cyclophilin superfamily
0.8908

37497

cysE
0.8894

269624

TIM_phosphate_binding superfamily
0.8879

35314

GSH_Peroxidase
0.8876

21229

hypothetical protein
0.8869

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
OTCace superfamily Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Aspartate/ornithine... - 158.89 3.34E-47 200 - 354 superfamily 249663
OTCace superfamily Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Aspartate/ornithine... - 158.89 3.34E-47 200 - 354 superfamily 249663
OTCace_N superfamily Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine... - 147.316 7.74E-43 28 - 172 superfamily 251498
OTCace_N superfamily Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine... - 147.316 7.74E-43 28 - 172 superfamily 251498
PLN02527 aspartate carbamoyltransferase - 493.881 9.78E-176 26 - 358 multi-dom 178142

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_25183 PHATRDRAFT_25183 190753 259494 53510 Cre02.g079700.t1.2 AT3G20330.1 555428

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004070 GO:0006207 GO:0006520 GO:0016597 GO:0016743 -

GO:0004070

aspartate carbamoyltransferase activity

Details: 
Catalysis of the reaction: L-aspartate + carbamoyl phosphate = N-carbamoyl-L-aspartate + H(+) + phosphate.
GO Category: 
MF

GO:0006207

'de novo' pyrimidine nucleobase biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
GO Category: 
BP

GO:0006520

cellular amino acid metabolic process

Details: 
The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
GO Category: 
BP

GO:0016597

amino acid binding

Details: 
Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
GO Category: 
MF

GO:0016743

carboxyl- or carbamoyltransferase activity

Details: 
Catalysis of the transfer of a carboxyl- or carbamoyl group from one compound (donor) to another (acceptor).
GO Category: 
MF

Add comment

Log in to post comments