34629 Rad10 superfamily
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
34629 chr_6 Rad10 superfamily 1428457 1429722 - Rad10 superfamily
NCBI ID Ensembl Genomes exon ID
7442733 Thaps34629.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0195
Normalized Mean Residue
Thaps_bicluster_0064
0.41
hypothetical protein
0.8895
DUF72
0.8874
DUF788 superfamily
0.8803
HAD-SF-IIA-hyp3
0.8778
hypothetical protein
0.8755
HA
0.8724
hypothetical protein
0.8713
hypothetical protein
0.8698
UBQ superfamily
0.8693
(bd870) LRR_RI superfamily
0.868
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Rad10 superfamily Binding domain of DNA repair protein Ercc1 (rad10/Swi10); Ercc1 and XPF (xeroderma pigmentosum... - 141.51 1.23E-40 182 - 293 superfamily 262083
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_13221 PHATR_13221 181618 158622 194939 Cre03.g196651.t1.1 AT3G05210.1 Not available
KEGG description KEGG Pathway
Nucleotide excision repair map03420
GO:0003677 GO:0003684 GO:0004519 GO:0005634 GO:0006281 -

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

damaged DNA binding

Details: 
Interacting selectively and non-covalently with damaged DNA.
GO Category: 
MF

endonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
GO Category: 
MF

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP
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