35896 IF-2B superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35896 chr_8 IF-2B superfamily 539243 540477 + IF-2B superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7445592 Thaps35896.2, Thaps35896.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0207

Most Highly Correlated Transcripts

16295

FBPase
0.9143

261126

DadA
0.9131

269556

DEADc
0.9066

264556

FBPase
0.8961

plastid_psb28

0.8924

27986

LMBR1 superfamily
0.8911

35314

GSH_Peroxidase
0.8899

24555

hypothetical protein
0.8883

260829

GalK
0.8853

6028

NA
0.8843

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
IF-2B superfamily Initiation factor 2 subunit family; This family includes initiation factor 2B alpha, beta and delta... - 415.107 3.10E-144 24 - 357 superfamily 260372

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_23811 PHATRDRAFT_23811 223582 255234 Not available Cre16.g673550.t1.1 AT2G05830.1 565850

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0003743 GO:0005525 GO:0005851 GO:0006413 -

GO:0003743

translation initiation factor activity

Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO Category: 
MF

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0005851

eukaryotic translation initiation factor 2B complex

Details: 
A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon.
GO Category: 
CC

GO:0006413

translational initiation

Details: 
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
GO Category: 
BP

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