36186 iojap_ybeB
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
36186 chr_9 iojap_ybeB 821354 822190 + iojap_ybeB
NCBI ID Ensembl Genomes exon ID
7448099 Thaps36186.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221
Normalized Mean Residue
Thaps_bicluster_0270
0.28
(bd96) eIF-3_zeta
0.9487
hypothetical protein
0.9363
(bd1709) NA
0.9335
(bd1667) Mpp10
0.9292
DUF914
0.9133
Brix superfamily
0.9117
(RT4) RpsD
0.909
ABC_ATPase superfamily
0.9085
Fcf2
0.9057
hypothetical protein
0.9035
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
iojap_ybeB iojap-like ribosome-associated protein; This model describes a widely distributed family of... cl00519 112.168 6.83E-31 121 - 224 specific 161702
Oligomerization superfamily Oligomerization domain; In yeasts, this domain is required for the oligomerization of ATP synthase... - 112.168 6.83E-31 121 - 224 superfamily 260473
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14645 PHATRDRAFT_14645 222783 154086 59582 Not available Not available Not available
KEGG description KEGG Pathway
Not available Not available
GO:0003910 GO:0005524 GO:0006260 GO:0006281 GO:0006310 GO:0005554 -

DNA ligase (ATP) activity

Details: 
Catalysis of the reaction: ATP + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + diphosphate + deoxyribonucleotide(n+m).
GO Category: 
MF

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

DNA replication

Details: 
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO Category: 
BP

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

DNA recombination

Details: 
Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
GO Category: 
BP

NA

Details: 
NA
GO Category: 
NA
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