38221 bPH_2Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
38221	chr_19a_19	bPH_2	154660	155050	-	bPH_2

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449887	Thaps38221.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0014

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0203	0.30	0.00019 0.029

Most Highly Correlated Transcripts

bd2088 (bd2088) rbcL 0.9251	bd1474 (bd1474) phytoene_desat 0.9125	bd1039 (bd1039) psbV 0.9074	23291 hypothetical protein 0.9011	bd598 (bd598) atpG 0.8995	bd1023 (bd1023) atpD 0.8977
bd1403 (bd1403) NA 0.8975	bd1318 (bd1318) atpF 0.8968	bd1306 (bd1306) NA 0.8964	bd1863 (bd1863) NA 0.8964

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
bPH_2		Bacterial PH domain; Domain found in uncharacterized family of membrane proteins. 1-3 copies found...	cl01348	56.8597	8.78E-12	41 - 108	specific	252109
bPH_2 superfamily		Bacterial PH domain; Domain found in uncharacterized family of membrane proteins. 1-3 copies found...	-	56.8597	8.78E-12	41 - 108	superfamily	260893

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_15371	PHATRDRAFT_15371	181826	253460	47434	Cre07.g321300.t1.2	AT1G14345.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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