39726 NrfG
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
39726 chr_2 NrfG 2367868 2369993 + NrfG

Synonyms

NCBI ID Ensembl Genomes exon ID
7452919 Thaps39726.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0153

Most Highly Correlated Transcripts

1684

Ion_trans_2
0.9327

30701

PRK05279
0.9268

261567

TPR
0.9259

262821

AAA
0.925

268257

fabG
0.9225

269705

hypothetical protein
0.9133

36007

Aldolase_II superfamily
0.9132

6997

hypothetical protein
0.9125

3570

PP2Cc
0.9109

23784

hypothetical protein
0.9089

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 81.2723 3.00E-18 525 - 658 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 81.2723 3.00E-18 525 - 658 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 81.2723 3.00E-18 525 - 658 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 81.2723 3.00E-18 525 - 658 superfamily 238112
NrfG FOG: TPR repeat [General function prediction only] - 102.232 6.95E-24 406 - 672 multi-dom 223533

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9475 PHATRDRAFT_9475 180607 301662 461030 Cre17.g740510.t1.1 AT2G20000.1 554422

KEGG

KEGG description KEGG Pathway
Ubiquitin mediated proteolysis map04120

GO Terms

Not available -

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