4142 LRR_RI superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
4142	chr_4	LRR_RI superfamily	285267	286715	+	LRR_RI superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446755	Thaps4142.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0284

Most Highly Correlated Transcripts

270222 0.9186	35136 NA 0.917	268443 SAICAR_synt_Sc 0.9052	19158 GRX_PICOT_like 0.9051	40200 TRX_reduct 0.8996	36007 Aldolase_II superfamily 0.8972
30701 PRK05279 0.8942	269624 TIM_phosphate_binding superfamily 0.8927	29469 hypothetical protein 0.8923	4612 hypothetical protein 0.8883

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LRR_RI superfamily		Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue...	-	81.2477	2.70E-17	101 - 367	superfamily	238064

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_54869	PHATRDRAFT_54869	178226	295631	Not available	Cre11.g479250.t1.2	AT3G63130.2	Not available

KEGG

KEGG description	KEGG Pathway
RNA transport	map03013

GO Terms

Not available -

Add comment

Log in to post comments