416 (rfC_3) rfc
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
416 chr_4 (rfC_3) rfc 1907050 1908297 - rfc
NCBI ID Ensembl Genomes exon ID
7443775 Thaps416.2, Thaps416.1, Thaps416.3
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0186
(Tp_CBF/NF5) regulator [Rayko]
0.9299
hypothetical protein
0.9165
(rfC2) rfc
0.9158
PHear_NECAP
0.9103
hypothetical protein
0.9094
COG0637
0.9086
E1_enzyme_family superfamily
0.9053
GalK
0.9026
(UBC2) UBCc
0.9019
RabGAP-TBC
0.8965
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 99.1427 4.15E-25 34 - 173 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 99.1427 4.15E-25 34 - 173 superfamily 267297
Rep_fac_C superfamily Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication factor-C... - 60.2128 9.87E-12 252 - 339 superfamily 254867
Rep_fac_C superfamily Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication factor-C... - 60.2128 9.87E-12 252 - 339 superfamily 254867
rfc replication factor C small subunit; Reviewed - 321.052 6.60E-108 18 - 334 multi-dom 234763
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9547 PHATRDRAFT_9547 196471 7408 424080 Cre06.g251800.t1.2 AT1G21690.1 551952
KEGG description KEGG Pathway
Mismatch repair map03430
GO:0003677 GO:0005663 GO:0006260 GO:0000166 GO:0017111 GO:0005524 GO:0003887 GO:0003889 GO:0003890 GO:0003891 GO:0003893 GO:0003894 GO:0003895 GO:0015999 GO:0016000 GO:0016448 GO:0016449 GO:0016450 GO:0016451 GO:0016452 GO:0019984 -

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

DNA replication factor C complex

Details: 
A complex of five polypeptides in eukaryotes, and two in prokaryotes, that loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA, thereby permitting processive DNA synthesis catalyzed by DNA polymerase.
GO Category: 
CC

DNA replication

Details: 
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO Category: 
BP

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

DNA-directed DNA polymerase activity

Details: 
Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer.
GO Category: 
MF

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

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NA
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NA

NA

Details: 
NA
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NA

NA

Details: 
NA
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NA

NA

Details: 
NA
GO Category: 
NA
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