41650 betA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
41650 chr_8 betA 1184887 1186777 - betA

Synonyms

NCBI ID Ensembl Genomes exon ID
7452380 Thaps41650.1, Thaps41650.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0247

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0040
 0.39

Most Highly Correlated Transcripts

7683

DUF3395 superfamily
0.8463

900

POP1 superfamily
0.8273

12899

AAA
0.8255

2133

NBD_sugar-kinase_HSP70_actin superfamily
0.8156

4290

hypothetical protein
0.8147

bd654

(bd654) Sec1 superfamily
0.8

5079

TRM13 superfamily
0.7987

262925

FAA1
0.7939

30193

(URE) PLN02303
0.7893

3804

hypothetical protein
0.7877

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NAD_binding_8 superfamily NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain. - 177.859 6.10E-52 25 - 273 superfamily 267487
GMC_oxred_C superfamily GMC oxidoreductase; This domain found associated with pfam00732. - 161.785 5.41E-47 368 - 501 superfamily 253079
GMC_oxred_C superfamily GMC oxidoreductase; This domain found associated with pfam00732. - 161.785 5.41E-47 368 - 501 superfamily 253079
betA choline dehydrogenase; Choline dehydrogenase catalyzes the conversion of exogenously supplied... - 575.675 0 1 - 513 multi-dom 233581

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_1341 PHATRDRAFT_1341 186935 323118 115992 Cre12.g514200.t1.2 AT1G72970.2 284485

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006118 GO:0016491 GO:0016614 GO:0050660 GO:0008812 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0016614

oxidoreductase activity, acting on CH-OH group of donors

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
GO Category: 
MF

GO:0050660

flavin adenine dinucleotide binding

Details: 
Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO Category: 
MF

GO:0008812

choline dehydrogenase activity

Details: 
Catalysis of the reaction: A + choline = AH(2) + betaine aldehyde.
GO Category: 
MF

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