42169 Nop10pThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
42169	chr_13	Nop10p	116106	117049	-	Nop10p

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450559	Thaps42169.2, Thaps42169.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0056

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0018	0.42

Most Highly Correlated Transcripts

7151 hypothetical protein 0.8914	269925 AAA_12 superfamily 0.89	23356 Gst 0.8818	22276 Gar1 0.8731	29469 hypothetical protein 0.8586	12088 DRG 0.8572
38707 Aldolase_Class_I superfamily 0.8565	38482 hypothetical protein 0.8525	6952 hypothetical protein 0.8519	21905 hypothetical protein 0.8493

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Nop10p		Nucleolar RNA-binding protein, Nop10p family; Nop10p is a nucleolar protein that is specifically...	cl00977	76.9077	1.70E-20	3 - 53	specific	252401
PolC_DP2 superfamily		DNA polymerase II large subunit DP2; DNA polymerase II large subunit DP2.	-	76.9077	1.70E-20	3 - 53	superfamily	260727

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
26473	PHATRDRAFT_9197	PHATRDRAFT_9197	Not available	310360	221723	Cre05.g237700.t1.2	AT2G20490.1	522844

KEGG

KEGG description	KEGG Pathway
Ribosome biogenesis in eukaryotes	map03008

GO Terms

GO:0000250 -

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