42515 DEADc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
42515 chr_15 DEADc 481020 484024 + DEADc

Synonyms

NCBI ID Ensembl Genomes exon ID
7449492 Thaps42515.4, Thaps42515.2, Thaps42515.3, Thaps42515.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0211
 0.43

Most Highly Correlated Transcripts

bd174

(bd174) Tim17 superfamily
0.8642

12899

AAA
0.8639

37156

PLN02369
0.8338

27550

NAD_bind_amino_acid_DH superfamily
0.822

34303

TEF1
0.8087

273

PRK04004
0.8067

20643

hypothetical protein
0.8055

30862

PTZ00368
0.8053

261047

Mito_carr
0.8045

36979

PIN_Fcf1
0.8041

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in... cl17251 304.022 3.86E-100 148 - 353 specific 238167
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 304.022 3.86E-100 148 - 353 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 150.081 7.04E-43 364 - 495 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 150.081 7.04E-43 364 - 495 superfamily 238034
PTZ00424 helicase 45; Provisional - 229.713 4.90E-69 147 - 523 multi-dom 185609

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_17862 PHATRDRAFT_17862 205426 234329 428126 Cre01.g028200.t1.1 AT5G63120.2 538125

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0003676 GO:0005524 GO:0008026 GO:0004386 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008026

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0004386

helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

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