5198 ClpSThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5198	chr_5	ClpS	591133	591577	-	ClpS

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450337	Thaps5198.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0455

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0123	0.31	0.14 1300

Most Highly Correlated Transcripts

10279 hypothetical protein 0.8386	10397 hypothetical protein 0.8312	4333 hypothetical protein 0.8264	5807 hypothetical protein 0.8231	41566 LbetaH superfamily 0.8227	10400 hypothetical protein 0.8218
3071 NA 0.8205	25944 p450 superfamily 0.8175	10523 hypothetical protein 0.8169	35279 (H4_2) H4 0.8169

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ClpS		ATP-dependent Clp protease adaptor protein ClpS; In the bacterial cytosol, ATP-dependent protein...	cl00933	68.6563	4.83E-16	68 - 137	specific	251421
ClpS superfamily		ATP-dependent Clp protease adaptor protein ClpS; In the bacterial cytosol, ATP-dependent protein...	-	68.6563	4.83E-16	68 - 137	superfamily	260704

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_43896	PHATR_43896	273247	180629	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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