5221 COG1233
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5221 chr_5 COG1233 650570 652675 - COG1233

Synonyms

NCBI ID Ensembl Genomes exon ID
7446407 Thaps5221.1, Thaps5221.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0147

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0021
 0.47

Most Highly Correlated Transcripts

261279

(DGT) PLN03242
0.8907

8509

hypothetical protein
0.8706

1681

Telomere_reg-2 superfamily
0.8674

260784

sec14-like cytosolic factor
0.8622

263997

(APA1) Adaptin_N
0.8571

261357

NAD_binding_8 superfamily
0.8542

263610

COG3899
0.8474

12859

VacB
0.8473

10400

hypothetical protein
0.8462

18434

PIPKc superfamily
0.8462

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NAD_binding_8 superfamily NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain. - 115.29 1.95E-27 50 - 649 superfamily 267487
COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and... - 144.114 3.46E-37 50 - 649 multi-dom 224154

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54826 PHATRDRAFT_54826 227318 214681 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016117 GO:0016705 GO:0050660 -

GO:0016117

carotenoid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail.
GO Category: 
BP

GO:0016705

oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
GO Category: 
MF

GO:0050660

flavin adenine dinucleotide binding

Details: 
Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO Category: 
MF

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