6348 GGCT_likeThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
6348	chr_6	GGCT_like	1357416	1358036	+	GGCT_like

Synonyms

NCBI ID	Ensembl Genomes exon ID
7453280	Thaps6348.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0032

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0121	0.36	0.06 0.000047

Most Highly Correlated Transcripts

968 RimI 0.929	36669 TPT 0.9149	7112 hypothetical protein 0.9123	7445 NTP-PPase_RS21-C6_like 0.9088	6238 hypothetical protein 0.9065	4876 hypothetical protein 0.906
9115 DnaJ 0.906	7611 hypothetical protein 0.9055	26991 GRX_GRXh_1_2_like 0.9037	23378 hypothetical protein 0.9019

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
GGCT_like		GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes...	cl18951	55.8138	6.93E-11	13 - 121	specific	119400
GGCT_like superfamily		GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes...	-	55.8138	6.93E-11	13 - 121	superfamily	267304

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_39079	PHATRDRAFT_39079	Not available	174363	Not available	Cre01.g019000.t1.2	AT2G24390.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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