8068 caca2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
8068 chr_9 caca2 668930 670658 + caca2

Synonyms

NCBI ID Ensembl Genomes exon ID
7453053 Thaps8068.1, Thaps8068.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0146

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0034
 0.54

Most Highly Correlated Transcripts

37934

GRX_PICOT_like
0.9162

30701

PRK05279
0.9058

18462

EMP24_GP25L
0.901

262395

DUF2453
0.9009

36037

Trypsin_2
0.8974

268192

Zip superfamily
0.8967

269624

TIM_phosphate_binding superfamily
0.8954

22673

NA
0.8948

11970

NADB_Rossmann superfamily
0.892

26470

(GFS1) PLN02725
0.8907

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Na_Ca_ex superfamily Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane... - 62.6196 7.94E-12 230 - 369 superfamily 250805
Na_Ca_ex superfamily Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane... - 62.6196 7.94E-12 230 - 369 superfamily 250805
Na_Ca_ex superfamily Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane... - 62.6196 7.94E-12 230 - 369 superfamily 250805
Na_Ca_ex superfamily Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane... - 62.6196 7.94E-12 230 - 369 superfamily 250805
caca2 calcium/proton exchanger; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA... - 283.141 6.57E-90 188 - 536 multi-dom 129926

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11387 PHATRDRAFT_11387 186975 233766 415715 Cre12.g519500.t1.2 Not available 545326

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016021 -

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

Add comment

Log in to post comments