9031 VPS28 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
9031	chr_12	VPS28 superfamily	369997	370675	-	VPS28 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445799	Thaps9031.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0497

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0046	0.42	0.56 320

Most Highly Correlated Transcripts

6796 hypothetical protein 0.845	4411 hypothetical protein 0.8312	262803 syntaxin 0.8265	264271 PKc_like superfamily 0.8259	20703 hypothetical protein 0.8171	bd740 (bd740) NA 0.8125
11609 hypothetical protein 0.8121	268976 Peptidase_A22B superfamily 0.8116	bd1938 (bd1938) NA 0.8101	23776 S_TKc 0.8092

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
VPS28 superfamily		VPS28 protein; VPS28 protein.	-	178.057	8.79E-56	37 - 222	superfamily	252303

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_19669	PHATRDRAFT_19669	181706	306251	Not available	Cre16.g678100.t1.2	AT4G05000.2	Not available

KEGG

KEGG description	KEGG Pathway
Endocytosis	map04144

GO Terms

Not available -

Add comment

Log in to post comments