9425 TPR_12
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9425 chr_13 TPR_12 397445 400100 - TPR_12

Synonyms

NCBI ID Ensembl Genomes exon ID
7453022 Thaps9425.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0217

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0177
 0.33

Most Highly Correlated Transcripts

bd392

(bd392) DEXDc
0.9326

4108

hypothetical protein
0.9063

21563

hypothetical protein
0.9024

bd624

(bd624) Glyco_transf_34 superfamily
0.891

3280

COG0790
0.8903

6552

hypothetical protein
0.8773

23013

Trs65
0.876

9166

hypothetical protein
0.8725

7460

hypothetical protein
0.8714

8748

Cnd1
0.8697

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 61.242 3.71E-11 699 - 810 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 61.242 3.71E-11 699 - 810 superfamily 238112
TPR_12 Tetratricopeptide repeat; Tetratricopeptide repeat. - 65.8614 5.03E-13 653 - 726 multi-dom 257749
TPR_12 Tetratricopeptide repeat; Tetratricopeptide repeat. - 65.8614 5.03E-13 653 - 726 multi-dom 257749
TPR_12 Tetratricopeptide repeat; Tetratricopeptide repeat. - 65.8614 5.03E-13 653 - 726 multi-dom 257749

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_44116 PHATR_44116 193745 299463 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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