9772 TOPEUc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9772 chr_14 TOPEUc 328281 330254 + TOPEUc

Synonyms

NCBI ID Ensembl Genomes exon ID
7450863 Thaps9772.2, Thaps9772.1, Thaps9772.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0206

Most Highly Correlated Transcripts

30701

PRK05279
0.9375

261126

DadA
0.9195

5105

hypothetical protein
0.9185

269624

TIM_phosphate_binding superfamily
0.9103

262977

NA
0.9086

38285

(PMSR1) MsrA
0.9081

35136

NA
0.9072

260829

GalK
0.904

13393

PLN02321
0.9034

36007

Aldolase_II superfamily
0.9028

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Topo_IB_C DNA topoisomerase IB, C-terminal catalytic domain. Topoisomerase I promotes the relaxation of both... cl00213 202.112 1.06E-60 226 - 437 specific 238355
DNA_BRE_C superfamily DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme... - 202.112 1.06E-60 226 - 437 superfamily 260266
Topoisomer_IB_N superfamily Topoisomer_IB_N: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB... - 247.494 5.97E-78 36 - 212 superfamily 261440
Topo_C_assoc superfamily C-terminal topoisomerase domain; This domain is found at the C-terminal of topoisomerase and other... - 140.058 5.18E-40 504 - 574 superfamily 258541
Topo_C_assoc superfamily C-terminal topoisomerase domain; This domain is found at the C-terminal of topoisomerase and other... - 140.058 5.18E-40 504 - 574 superfamily 258541
TOPEUc DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina... - 505.731 1.09E-175 143 - 547 multi-dom 214661

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_13384 PHATR_13384 225326 319867 462815 Cre03.g178600.t1.1 AT5G55310.1 358817

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0003917 GO:0006265 GO:0006268 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003917

DNA topoisomerase type I activity

Details: 
Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle.
GO Category: 
MF

GO:0006265

DNA topological change

Details: 
The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
GO Category: 
BP

GO:0006268

DNA unwinding involved in DNA replication

Details: 
The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating unpaired template strands for DNA replication.
GO Category: 
BP

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