Thaps_bicluster_0004 Residual: 0.42
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0004 0.42 Thalassiosira pseudonana
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Displaying 1 - 39 of 39
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11093 GH99_GH71_like_2

11093 - GH99_GH71_like_2

GO Terms:

NA

CD Domains:

Go To Gene Page:

11093
11242 hypothetical protein

11242 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11242
19553 PX_domain superfamily

19553 - PX_domain superfamily

GO Terms:

GO:0007242

CD Domains:

Go To Gene Page:

19553
2070 hypothetical protein

2070 - hypothetical protein

GO Terms:

GO:0005524, GO:0015986, GO:0016469, GO:0046933, GO:0046961

CD Domains:

Go To Gene Page:

2070
22142 hypothetical protein

22142 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22142
22382 hypothetical protein

22382 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22382
23108 hypothetical protein

23108 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23108
24452 hypothetical protein

24452 - hypothetical protein

GO Terms:

GO:0003676, GO:0005622

CD Domains:

Go To Gene Page:

24452
25734 hypothetical protein

25734 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25734
260785 NOX_Duox_like_FAD_NADP

260785 - NOX_Duox_like_FAD_NADP

GO Terms:

GO:0006118, GO:0016020, GO:0016491

CD Domains:

Go To Gene Page:

260785
262620 ANK

262620 - ANK

GO Terms:

NA

CD Domains:

Go To Gene Page:

262620
262645 Glyco_18

262645 - Glyco_18

GO Terms:

GO:0008152, GO:0016787, GO:0003824, GO:0005975, GO:0004568, GO:0008843

CD Domains:

Go To Gene Page:

262645
268368 (Tp_HSF_3.6a) HSF_DNA-bind superfamily

268368 - (Tp_HSF_3.6a) HSF_DNA-bind superfamily

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677

CD Domains:

Go To Gene Page:

268368
269718 sucA

269718 - sucA

GO Terms:

GO:0008152, GO:0016624, GO:0004591

CD Domains:

Go To Gene Page:

269718
269868 MviM

269868 - MviM

GO Terms:

GO:0006118, GO:0008152, GO:0016491

CD Domains:

Go To Gene Page:

269868
30335 hypothetical protein

30335 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

30335
3052 hypothetical protein

3052 - hypothetical protein

GO Terms:

GO:0003824

CD Domains:

Go To Gene Page:

3052
31298 S_TKc

31298 - S_TKc

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

31298
3137 hypothetical protein

3137 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3137
3394 hypothetical protein

3394 - hypothetical protein

GO Terms:

GO:0000158, GO:0004721, GO:0004723, GO:0004724, GO:0005963, GO:0008420, GO:0008597, GO:0015071, GO:0017018, GO:0017020, GO:0017023, GO:0030357

CD Domains:

Go To Gene Page:

3394
34186 SPC12

34186 - SPC12

GO Terms:

GO:0005787, GO:0005792, GO:0006465, GO:0009003, GO:0016021, GO:0008233, GO:0008234

CD Domains:

Go To Gene Page:

34186
35281 PKc_like superfamily

35281 - PKc_like superfamily

GO Terms:

GO:0004672, GO:0005524, GO:0006468

CD Domains:

Go To Gene Page:

35281
35519 hypothetical protein

35519 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

35519
37959 hypothetical protein

37959 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

37959
38335 (PSB3) proteasome_beta_type_3

38335 - (PSB3) proteasome_beta_type_3

GO Terms:

GO:0004298, GO:0005839, GO:0006511, GO:0004299

CD Domains:

Go To Gene Page:

38335
39955 ARM

39955 - ARM

GO Terms:

NA

CD Domains:

Go To Gene Page:

39955
4043 KAP

4043 - KAP

GO Terms:

NA

CD Domains:

Go To Gene Page:

4043
5301 hypothetical protein

5301 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5301
5801 hypothetical protein

5801 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5801
6982 hypothetical protein

6982 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6982
7623 hypothetical protein

7623 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7623
8330 hypothetical protein

8330 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8330
8518 hypothetical protein

8518 - hypothetical protein

GO Terms:

GO:0005515

CD Domains:

Go To Gene Page:

8518
8615 hypothetical protein

8615 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8615
9475 hypothetical protein

9475 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9475
953 hypothetical protein

953 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

953
9953 hypothetical protein

9953 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9953
9998 BTB superfamily

9998 - BTB superfamily

GO Terms:

GO:0005515, GO:0005249, GO:0006813, GO:0008076, GO:0016020

CD Domains:

Go To Gene Page:

9998
GO ID Go Term p-value q-value Cluster
GO:0006465 signal peptide processing 0.0123506 1 Thaps_bicluster_0004
GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system 0.0544657 1 Thaps_bicluster_0004
GO:0006813 potassium ion transport 0.066187 1 Thaps_bicluster_0004
GO:0007242 intracellular signaling cascade 0.122787 1 Thaps_bicluster_0004
GO:0008152 metabolism 0.126308 1 Thaps_bicluster_0004
GO:0015986 ATP synthesis coupled proton transport 0.133715 1 Thaps_bicluster_0004
GO:0006468 protein amino acid phosphorylation 0.139278 1 Thaps_bicluster_0004
GO:0006511 ubiquitin-dependent protein catabolism 0.147198 1 Thaps_bicluster_0004
GO:0006118 electron transport 0.198115 1 Thaps_bicluster_0004
GO:0005975 carbohydrate metabolism 0.209229 1 Thaps_bicluster_0004
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