Thaps_bicluster_0011 Residual: 0.46
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0011 0.46 Thalassiosira pseudonana
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Displaying 1 - 53 of 53
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11024 hypothetical protein

11024 - hypothetical protein

GO Terms:

GO:0005622

CD Domains:

Go To Gene Page:

11024
11266 hypothetical protein

11266 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11266
11306 hypothetical protein

11306 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11306
11953 FAA1

11953 - FAA1

GO Terms:

GO:0003824, GO:0008152, GO:0004467

CD Domains:

Go To Gene Page:

11953
16772 Mito_carr

16772 - Mito_carr

GO Terms:

GO:0005488, GO:0006810, GO:0016020, GO:0005743

CD Domains:

Go To Gene Page:

16772
2015 hypothetical protein

2015 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2015
20873 PCIF1_WW superfamily

20873 - PCIF1_WW superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

20873
20950 LPLAT superfamily

20950 - LPLAT superfamily

GO Terms:

GO:0003824

CD Domains:

Go To Gene Page:

20950
20964 hypothetical protein

20964 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

20964
20997 hypothetical protein

20997 - hypothetical protein

GO Terms:

GO:0008270

CD Domains:

Go To Gene Page:

20997
21646 hypothetical protein

21646 - hypothetical protein

GO Terms:

GO:0004869

CD Domains:

Go To Gene Page:

21646
21652 hypothetical protein

21652 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21652
21726 hypothetical protein

21726 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21726
21923 hypothetical protein

21923 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21923
22223 Serinc superfamily

22223 - Serinc superfamily

GO Terms:

GO:0016020

CD Domains:

Go To Gene Page:

22223
22513 hypothetical protein

22513 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22513
23196 RRM_SF superfamily

23196 - RRM_SF superfamily

GO Terms:

GO:0003676

CD Domains:

Go To Gene Page:

23196
23303 hypothetical protein

23303 - hypothetical protein

GO Terms:

GO:0003684, GO:0005524, GO:0006298

CD Domains:

Go To Gene Page:

23303
23792 Lipase_3

23792 - Lipase_3

GO Terms:

GO:0004806, GO:0006629

CD Domains:

Go To Gene Page:

23792
2387 hypothetical protein

2387 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2387
23981 hypothetical protein

23981 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23981
24149 hypothetical protein

24149 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24149
24250 SLC5sbd_DUR3

24250 - SLC5sbd_DUR3

GO Terms:

GO:0005215, GO:0006810, GO:0016020

CD Domains:

Go To Gene Page:

24250
24274 hypothetical protein

24274 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24274
25319 hypothetical protein

25319 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25319
2562 hypothetical protein

2562 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2562
25685 hypothetical protein

25685 - hypothetical protein

GO Terms:

GO:0004295, GO:0006508

CD Domains:

Go To Gene Page:

25685
25801 hypothetical protein

25801 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25801
262242 VL_LC_FACS_like

262242 - VL_LC_FACS_like

GO Terms:

GO:0003824, GO:0008152, GO:0005509, GO:0004467

CD Domains:

Go To Gene Page:

262242
263925 SpoT

263925 - SpoT

GO Terms:

GO:0015969

CD Domains:

Go To Gene Page:

263925
263953 CYCc

263953 - CYCc

GO Terms:

GO:0007242, GO:0009190, GO:0016849

CD Domains:

Go To Gene Page:

263953
264610 Prolidase

264610 - Prolidase

GO Terms:

GO:0006508, GO:0008235, GO:0004812, GO:0005524, GO:0006418, GO:0004251

CD Domains:

Go To Gene Page:

264610
267997 (Rad54) SNF2_N
270334 hypothetical protein

270334 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

270334
3067 hypothetical protein

3067 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3067
3409 hypothetical protein

3409 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3409
3755 hypothetical protein

3755 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3755
37637 ABCG_PDR_domain2

37637 - ABCG_PDR_domain2

GO Terms:

GO:0005524, GO:0016887, GO:0000166, GO:0017111

CD Domains:

Go To Gene Page:

37637
4254 hypothetical protein

4254 - hypothetical protein

GO Terms:

GO:0003677, GO:0006355

CD Domains:

Go To Gene Page:

4254
4744 hypothetical protein

4744 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4744
4793 hypothetical protein

4793 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4793
5114 hypothetical protein

5114 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5114
5193 DUF2263 superfamily

5193 - DUF2263 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

5193
5795 hypothetical protein

5795 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5795
6895 hypothetical protein

6895 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6895
7172 hypothetical protein

7172 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7172
8469 hypothetical protein

8469 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8469
8750 Reelin_subrepeat_Nt

8750 - Reelin_subrepeat_Nt

GO Terms:

NA

CD Domains:

Go To Gene Page:

8750
8942 hypothetical protein

8942 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8942
9701 hypothetical protein

9701 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9701
ThpsCp084 (ccs1) c-type cytochrome biogenensis protein

ThpsCp084 - (ccs1) c-type cytochrome biogenensis protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

ThpsCp084
ThpsCt013 (trnG(gcc))

ThpsCt013 - (trnG(gcc))

GO Terms:

NA

CD Domains:

Go To Gene Page:

ThpsCt013
GO ID Go Term p-value q-value Cluster
GO:0015969 guanosine tetraphosphate metabolism 0.0115308 1 Thaps_bicluster_0011
GO:0006298 mismatch repair 0.0453868 1 Thaps_bicluster_0011
GO:0009190 cyclic nucleotide biosynthesis 0.061908 1 Thaps_bicluster_0011
GO:0006629 lipid metabolism 0.080847 1 Thaps_bicluster_0011
GO:0006810 transport 0.0970736 1 Thaps_bicluster_0011
GO:0007242 intracellular signaling cascade 0.115081 1 Thaps_bicluster_0011
GO:0006418 tRNA aminoacylation for protein translation 0.153109 1 Thaps_bicluster_0011
GO:0006508 proteolysis and peptidolysis 0.201185 1 Thaps_bicluster_0011
GO:0008152 metabolism 0.332159 1 Thaps_bicluster_0011
GO:0006468 protein amino acid phosphorylation 0.468128 1 Thaps_bicluster_0011
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