Thaps_bicluster_0012 Residual: 0.49
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0012 0.49 Thalassiosira pseudonana
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Displaying 1 - 37 of 37
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10164 hypothetical protein

10164 - hypothetical protein

GO Terms:

GO:0005509, GO:0031177, GO:0003968, GO:0019079

CD Domains:

Go To Gene Page:

10164
10800 hypothetical protein

10800 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10800
11026 hypothetical protein

11026 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11026
11876 hypothetical protein

11876 - hypothetical protein

GO Terms:

GO:0000151, GO:0004842, GO:0008270, GO:0016567

CD Domains:

Go To Gene Page:

11876
11962 hypothetical protein

11962 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

11962
1420 hypothetical protein

1420 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1420
18351 Maf

18351 - Maf

GO Terms:

NA

CD Domains:

Go To Gene Page:

18351
18954 (APT2) PRTases_typeI

18954 - (APT2) PRTases_typeI

GO Terms:

GO:0009116, GO:0016740, GO:0031177, GO:0003999

CD Domains:

Go To Gene Page:

18954
20223 RRM_HP0827_like

20223 - RRM_HP0827_like

GO Terms:

GO:0003676

CD Domains:

Go To Gene Page:

20223
21830 WLM superfamily

21830 - WLM superfamily

GO Terms:

GO:0006508, GO:0008237, GO:0008270

CD Domains:

Go To Gene Page:

21830
22607 S_TKc

22607 - S_TKc

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

22607
23152 G1/S-specific cyclin e2-like protein

23152 - G1/S-specific cyclin e2-like protein

GO Terms:

GO:0000074

CD Domains:

Go To Gene Page:

23152
24747 hypothetical protein

24747 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24747
25100 PAP_fibrillin superfamily

25100 - PAP_fibrillin superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

25100
25853 hypothetical protein

25853 - hypothetical protein

GO Terms:

GO:0005509

CD Domains:

Go To Gene Page:

25853
2604 hypothetical protein

2604 - hypothetical protein

GO Terms:

GO:0000074

CD Domains:

Go To Gene Page:

2604
261285 HSP70_NBD

261285 - HSP70_NBD

GO Terms:

GO:0005524

CD Domains:

Go To Gene Page:

261285
261825 Tryp_SPc

261825 - Tryp_SPc

GO Terms:

GO:0004295, GO:0006508, GO:0004263

CD Domains:

Go To Gene Page:

261825
262322 (Tp_Hox5b) regulator [Rayko]

262322 - (Tp_Hox5b) regulator [Rayko]

GO Terms:

GO:0003677, GO:0003700, GO:0005634, GO:0006355

CD Domains:

Go To Gene Page:

262322
263766 SBF superfamily

263766 - SBF superfamily

GO Terms:

GO:0006814, GO:0008508, GO:0016020

CD Domains:

Go To Gene Page:

263766
26467 hypothetical protein

26467 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

26467
267973 hypothetical protein

267973 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

267973
270139 Aa_trans superfamily

270139 - Aa_trans superfamily

GO Terms:

GO:0005279, GO:0006865, GO:0016020

CD Domains:

Go To Gene Page:

270139
2880 TspO_MBR

2880 - TspO_MBR

GO Terms:

GO:0016021

CD Domains:

Go To Gene Page:

2880
3159 Trichoplein

3159 - Trichoplein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3159
33376 DPCK

33376 - DPCK

GO Terms:

GO:0005524, GO:0004140

CD Domains:

Go To Gene Page:

33376
36563 MYSc

36563 - MYSc

GO Terms:

GO:0003774, GO:0005524, GO:0016459

CD Domains:

Go To Gene Page:

36563
38039 (Tp_Myb2R5) SANT

38039 - (Tp_Myb2R5) SANT

GO Terms:

GO:0003677, GO:0005634

CD Domains:

Go To Gene Page:

38039
38815 (Rpb8) RNA_pol_Rpb8 superfamily

38815 - (Rpb8) RNA_pol_Rpb8 superfamily

GO Terms:

GO:0006350, GO:0003899, GO:0003900, GO:0003901, GO:0003902

CD Domains:

Go To Gene Page:

38815
4350 hypothetical protein

4350 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4350
6656 PROCN

6656 - PROCN

GO Terms:

NA

CD Domains:

Go To Gene Page:

6656
7702 hypothetical protein

7702 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7702
7734 hypothetical protein

7734 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7734
7880 hypothetical protein

7880 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7880
8166 hypothetical protein

8166 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8166
8354 hypothetical protein

8354 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8354
8502 hypothetical protein

8502 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8502
GO ID Go Term p-value q-value Cluster
GO:0019079 viral genome replication 0.00248088 1 Thaps_bicluster_0012
GO:0000074 regulation of cell cycle 0.00922038 1 Thaps_bicluster_0012
GO:0009116 nucleoside metabolism 0.0148008 1 Thaps_bicluster_0012
GO:0006814 sodium ion transport 0.0269812 1 Thaps_bicluster_0012
GO:0006865 amino acid transport 0.0696965 1 Thaps_bicluster_0012
GO:0006350 transcription 0.0720184 1 Thaps_bicluster_0012
GO:0006508 proteolysis and peptidolysis 0.157438 1 Thaps_bicluster_0012
GO:0016567 protein ubiquitination 0.179494 1 Thaps_bicluster_0012
GO:0006468 protein amino acid phosphorylation 0.41786 1 Thaps_bicluster_0012
GO:0006355 regulation of transcription, DNA-dependent 0.545155 1 Thaps_bicluster_0012
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