Thaps_bicluster_0015 Residual: 0.38
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0015 0.38 Thalassiosira pseudonana
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Displaying 1 - 50 of 50
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10189 hypothetical protein

10189 - hypothetical protein

GO Terms:

GO:0005515, GO:0004402

CD Domains:

Go To Gene Page:

10189
11217 MviM

11217 - MviM

GO Terms:

GO:0006118, GO:0008152, GO:0016491

CD Domains:

Go To Gene Page:

11217
1161 (Tp_CCHH11) regulator [Rayko]

1161 - (Tp_CCHH11) regulator [Rayko]

GO Terms:

GO:0003676, GO:0005634, GO:0008270

CD Domains:

Go To Gene Page:

1161
11858 hypothetical protein

11858 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11858
12013 hypothetical protein

12013 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12013
12107 hypothetical protein

12107 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12107
1533 Nudix_Hydrolase superfamily

1533 - Nudix_Hydrolase superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

1533
1549 (FAH1) p450 superfamily

1549 - (FAH1) p450 superfamily

GO Terms:

GO:0006118, GO:0004497

CD Domains:

Go To Gene Page:

1549
17593 Peptidases_S8_Subtilisin_subset

17593 - Peptidases_S8_Subtilisin_subset

GO Terms:

GO:0004289, GO:0006508

CD Domains:

Go To Gene Page:

17593
17815 E1_enzyme_family superfamily

17815 - E1_enzyme_family superfamily

GO Terms:

GO:0003824

CD Domains:

Go To Gene Page:

17815
20924 hypothetical protein

20924 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

20924
21126 hypothetical protein

21126 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21126
21619 Lpd

21619 - Lpd

GO Terms:

GO:0006118, GO:0016491, GO:0015036, GO:0005509, GO:0005737, GO:0004148

CD Domains:

Go To Gene Page:

21619
22900 hypothetical protein

22900 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22900
22984 gelsolin_S1_like

22984 - gelsolin_S1_like

GO Terms:

GO:0003779

CD Domains:

Go To Gene Page:

22984
24981 hypothetical protein

24981 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24981
25557 hypothetical protein

25557 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25557
261932 REC

261932 - REC

GO Terms:

GO:0000156, GO:0000160, GO:0003677, GO:0006355

CD Domains:

Go To Gene Page:

261932
262359 Sec7

262359 - Sec7

GO Terms:

NA

CD Domains:

Go To Gene Page:

262359
262478 (apc10) APC10

262478 - (apc10) APC10

GO Terms:

GO:0005515, GO:0005680, GO:0030071

CD Domains:

Go To Gene Page:

262478
263089 (BRAC2) BRCA-2_OB1

263089 - (BRAC2) BRCA-2_OB1

GO Terms:

NA

CD Domains:

Go To Gene Page:

263089
263297 Glyco_18

263297 - Glyco_18

GO Terms:

GO:0008152, GO:0016787, GO:0003824, GO:0005975, GO:0004568, GO:0008843

CD Domains:

Go To Gene Page:

263297
263355 COG3899

263355 - COG3899

GO Terms:

NA

CD Domains:

Go To Gene Page:

263355
263360 FIG superfamily

263360 - FIG superfamily

GO Terms:

GO:0004437, GO:0008441

CD Domains:

Go To Gene Page:

263360
263504 sensory_box

263504 - sensory_box

GO Terms:

GO:0004871, GO:0007165, GO:0000155, GO:0000160, GO:0006355

CD Domains:

Go To Gene Page:

263504
264010 P4Hc

264010 - P4Hc

GO Terms:

GO:0016706, GO:0019538, GO:0004656, GO:0016222

CD Domains:

Go To Gene Page:

264010
264663 TRX_family

264663 - TRX_family

GO Terms:

GO:0005489, GO:0006118, GO:0004791

CD Domains:

Go To Gene Page:

264663
269254 (Tp_E2F-DP2) E2F_TDP

269254 - (Tp_E2F-DP2) E2F_TDP

GO Terms:

GO:0000074, GO:0003700, GO:0005667, GO:0006355

CD Domains:

Go To Gene Page:

269254
28544 PLN02775

28544 - PLN02775

GO Terms:

GO:0008839, GO:0009089

CD Domains:

Go To Gene Page:

28544
30854 DnaJ

30854 - DnaJ

GO Terms:

GO:0006457, GO:0031072, GO:0051082

CD Domains:

Go To Gene Page:

30854
30963 (PKA) STKc_PKA

30963 - (PKA) STKc_PKA

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004674, GO:0004713

CD Domains:

Go To Gene Page:

30963
31629 hypothetical protein

31629 - hypothetical protein

GO Terms:

GO:0005198

CD Domains:

Go To Gene Page:

31629
31862 PP2Cc

31862 - PP2Cc

GO Terms:

GO:0003824

CD Domains:

Go To Gene Page:

31862
32092 SPX

32092 - SPX

GO Terms:

NA

CD Domains:

Go To Gene Page:

32092
32840 Motor_domain superfamily

32840 - Motor_domain superfamily

GO Terms:

GO:0003777, GO:0005524, GO:0005875, GO:0007018

CD Domains:

Go To Gene Page:

32840
3313 plant_peroxidase_like

3313 - plant_peroxidase_like

GO Terms:

GO:0004601, GO:0006979, GO:0016688

CD Domains:

Go To Gene Page:

3313
34332 mre11

34332 - mre11

GO Terms:

GO:0016787, GO:0004519, GO:0005634, GO:0006302, GO:0030145

CD Domains:

Go To Gene Page:

34332
37158 HepA

37158 - HepA

GO Terms:

NA

CD Domains:

Go To Gene Page:

37158
37576 TPR

37576 - TPR

GO Terms:

NA

CD Domains:

Go To Gene Page:

37576
37862 S_TKc

37862 - S_TKc

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

37862
3850 hypothetical protein

3850 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3850
3861 hypothetical protein

3861 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3861
38788 FYVE

38788 - FYVE

GO Terms:

GO:0008270

CD Domains:

Go To Gene Page:

38788
38789 ArsB_NhaD_permease superfamily

38789 - ArsB_NhaD_permease superfamily

GO Terms:

GO:0005978, GO:0006813, GO:0008324

CD Domains:

Go To Gene Page:

38789
4743 hypothetical protein

4743 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4743
4908 hypothetical protein

4908 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4908
5574 SufI

5574 - SufI

GO Terms:

GO:0005507, GO:0003824, GO:0045735

CD Domains:

Go To Gene Page:

5574
7146 hypothetical protein

7146 - hypothetical protein

GO Terms:

GO:0006464

CD Domains:

Go To Gene Page:

7146
9162 hypothetical protein

9162 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9162
GO ID Go Term p-value q-value Cluster
GO:0006302 double-strand break repair 0.00578871 1 Thaps_bicluster_0015
GO:0005978 glycogen biosynthesis 0.00578871 1 Thaps_bicluster_0015
GO:0030071 regulation of mitotic metaphase/anaphase transition 0.00578871 1 Thaps_bicluster_0015
GO:0000160 two-component signal transduction system (phosphorelay) 0.0103732 1 Thaps_bicluster_0015
GO:0009089 lysine biosynthesis via diaminopimelate 0.0172694 1 Thaps_bicluster_0015
GO:0006118 electron transport 0.0647377 1 Thaps_bicluster_0015
GO:0006813 potassium ion transport 0.120147 1 Thaps_bicluster_0015
GO:0006468 protein amino acid phosphorylation 0.123306 1 Thaps_bicluster_0015
GO:0006979 response to oxidative stress 0.130351 1 Thaps_bicluster_0015
GO:0007165 signal transduction 0.207977 1 Thaps_bicluster_0015
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