Thaps_bicluster_0018 Residual: 0.42
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0018 0.42 Thalassiosira pseudonana
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Displaying 1 - 42 of 42
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10219 Chloroa_b-bind

10219 - Chloroa_b-bind

GO Terms:

GO:0009765, GO:0016020

CD Domains:

Go To Gene Page:

10219
10371 hypothetical protein

10371 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10371
10442 hypothetical protein

10442 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10442
11025 hypothetical protein

11025 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11025
11927 hypothetical protein

11927 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11927
12209 hypothetical protein

12209 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12209
1711 SEC14

1711 - SEC14

GO Terms:

GO:0004725, GO:0004727

CD Domains:

Go To Gene Page:

1711
18099 (NIFU_2) Nfu_N

18099 - (NIFU_2) Nfu_N

GO Terms:

NA

CD Domains:

Go To Gene Page:

18099
20888 hypothetical protein

20888 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

20888
21208 hypothetical protein

21208 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21208
22368 MRP-like

22368 - MRP-like

GO Terms:

NA

CD Domains:

Go To Gene Page:

22368
22835 hypothetical protein

22835 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22835
22876 hypothetical protein

22876 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22876
23304 hypothetical protein

23304 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23304
24046 hypothetical protein

24046 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24046
24294 hypothetical protein

24294 - hypothetical protein

GO Terms:

GO:0006508, GO:0008237, GO:0008270

CD Domains:

Go To Gene Page:

24294
24396 hypothetical protein

24396 - hypothetical protein

GO Terms:

GO:0003700, GO:0005634, GO:0006355

CD Domains:

Go To Gene Page:

24396
261696

261696 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

261696
2623 SPRYD7

2623 - SPRYD7

GO Terms:

NA

CD Domains:

Go To Gene Page:

2623
263605

263605 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

263605
264208 DnaJ

264208 - DnaJ

GO Terms:

GO:0006457, GO:0031072, GO:0051082

CD Domains:

Go To Gene Page:

264208
268167 hypothetical protein

268167 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

268167
268286 hypothetical protein

268286 - hypothetical protein

GO Terms:

GO:0015520, GO:0015904, GO:0016021, GO:0005215, GO:0006810

CD Domains:

Go To Gene Page:

268286
268839 RRM1_TatSF1_like

268839 - RRM1_TatSF1_like

GO Terms:

GO:0003676

CD Domains:

Go To Gene Page:

268839
3222 CAS_like superfamily

3222 - CAS_like superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

3222
32971 Tryp_SPc superfamily

32971 - Tryp_SPc superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

32971
34559 S_TKc

34559 - S_TKc

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

34559
35932 ArfGap

35932 - ArfGap

GO Terms:

GO:0043087

CD Domains:

Go To Gene Page:

35932
42133 CHD

42133 - CHD

GO Terms:

GO:0007242, GO:0009190, GO:0016849

CD Domains:

Go To Gene Page:

42133
42169 Nop10p

42169 - Nop10p

GO Terms:

GO:0000250

CD Domains:

Go To Gene Page:

42169
5658 hypothetical protein

5658 - hypothetical protein

GO Terms:

GO:0003677, GO:0006355

CD Domains:

Go To Gene Page:

5658
5748 hypothetical protein

5748 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5748
6670 DUF1162 superfamily

6670 - DUF1162 superfamily

GO Terms:

GO:0005515

CD Domains:

Go To Gene Page:

6670
6800 CECR5

6800 - CECR5

GO Terms:

GO:0008152, GO:0016787

CD Domains:

Go To Gene Page:

6800
7355 hypothetical protein

7355 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7355
7503 hypothetical protein

7503 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7503
7859 hypothetical protein

7859 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7859
8428 APG6

8428 - APG6

GO Terms:

NA

CD Domains:

Go To Gene Page:

8428
9280 hypothetical protein

9280 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9280
9371 hypothetical protein

9371 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9371
954 hypothetical protein

954 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

954
GO ID Go Term p-value q-value Cluster
GO:0043087 regulation of GTPase activity 0.0265779 1 Thaps_bicluster_0018
GO:0009190 cyclic nucleotide biosynthesis 0.0576102 1 Thaps_bicluster_0018
GO:0006260 DNA replication 0.0901962 1 Thaps_bicluster_0018
GO:0009765 photosynthesis light harvesting 0.10245 1 Thaps_bicluster_0018
GO:0007242 intracellular signaling cascade 0.107309 1 Thaps_bicluster_0018
GO:0006355 regulation of transcription, DNA-dependent 0.197871 1 Thaps_bicluster_0018
GO:0006457 protein folding 0.298558 1 Thaps_bicluster_0018
GO:0006810 transport 0.396381 1 Thaps_bicluster_0018
GO:0006468 protein amino acid phosphorylation 0.443559 1 Thaps_bicluster_0018
GO:0006508 proteolysis and peptidolysis 0.550247 1 Thaps_bicluster_0018
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